SFRP Alignments

DeCypher Results for: Protein Multiple Alignment

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SFRP1mouse      MGVGRSARGRGGAASGVLLALAAALLAAGS-ASEYDYVSFQSDIGSYQSGRFYTKPPQCV
SFRP2mouse      -------MPRG---PASLLLLVLASHCCLG-SARGLFLFGQPDFS----YK--R--SNCK
SFRP3mouse      ----MVCCGPGRMLLGWAGLLVLAALCLLQ------VPGAQAAA--------------CE
SFRP4human      ---------------MFLSILVALCLWLHL------ALGVRGAP--------------CE
SFRP5human      ---MRAAAAAGGVRTAALALLLGALHWAPARCEEYDYYGWQAEP---LHGRSYSKPPQCL
                                    *                   :                 *

SFRP1mouse      DIPVDLRLCHNVGYKKMVLPNLLEHETMAEVKQQASSWVPLLNKNCHMGTQVFLCSLFAP
SFRP2mouse      PIPANLQLCHGIEYQNMRLPNLLGHETMKEVLEQAGAWIPLVMKQCHPDTKKFLCSLFAP
SFRP3mouse      --PVRIPLCKSLPWNMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAP
SFRP4human      --AVRIPMCRHMPWNITRMPNHLHHSTQENAILAIEQYEELVDVNCSAVLRFFFCAMYAP
SFRP5human      DIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQASSWLPLLAKRCHSDTQVFLCSLFAP
                  .. : :*: : ::   :** * *.:  :.      :  *:  .*      *:*:::**

SFRP1mouse      VC----LDRPIYPCRWLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEG--DVCIAMTPPN
SFRP2mouse      VCLDD-LDETIQPCHSLCVQVKDRCAPVMSAFGFPWPDMLECDRFPQDN-DLCIPLASSD
SFRP3mouse      ICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYDRGVCISPEAIV
SFRP4human      ICTLEFLHDPIKPCKSVCQRARDDCEPLMKMYNHSWPESLACDELPVYDRGVCISPEAIV
SFRP5human      VC----LDRPIYPCRSLCEAVRAGCAPLMEAYGFPWPEMLHCHKFPLDN-DLCIAVQFG-
                :*     . .* **: :*  .:  * *::  : . **: * *..:*    .:**.

SFRP1mouse      TTEASKPQGTTVCP-------------------PCDNELKSEA-IIEHLCAS-EFALRMK
SFRP2mouse      HLLPATEEAPKVCE-------------------ACKTKNEDDNDIMETLCKN-DFALKIK
SFRP3mouse      TADGADFPMDSSTG-----------HCRGASSERCKCKPVRAT-QKTYFRNNYNYVIRAK
SFRP4human      TDLPEDVKWIDITPDMMVQERPLDVDCKRLSPDRCKCKKVKPT-LATYLSKNYSYVIHAK
SFRP5human      HLPATAPPVTKICA-------------------QCEMEHSADG-LMEQMCSS-DFVVKMR
                                                  *. :          :  . .:.:: :

SFRP1mouse      IKEVKKE-NGDKKIVPK--KKKPLKLGPIKKKELKALVLFLKNGADCPCHQLDNLSHNFL
SFRP2mouse      VKEITYI-NRDTKIILETKSKTIYKLNGVSERDLKKSVLWLKDSLQCTCEEMNDINAPYL
SFRP3mouse      VKEVKMK-CHDVTAVVE--VKEILKASLVN---IPRDTVNLYTTSGCLCPPLT-VNEEYV
SFRP4human      IKAVQRSGCNEVTTVVD--VKEIFKSSSP----IPRTQVPLITNSSCQCPHIL-PHQDVL
SFRP5human      IKEIKIE-NGDRKLIGAQKKKKLLKPGPLKRKDTKRLVLHMKNGAGCPCPQLDSLAGSFL
                :* :      : . :     *   * .           : :     * *  :       :

SFRP1mouse      IMGR--KVKSQYLLTA---IHKW-DKKNKEFKNFMKRM----KNHECPTFQSVFK-----
SFRP2mouse      VMGQ--KQGGELVITS---VKRW-QKGQREFKRISRSI----RKLQC-------------
SFRP3mouse      IMGYEDEERSRLLLVEGSIAEKWKDRLGKKVKRWDMKL----RHLGLGKTDASDSTQNQ-
SFRP4human      IMCY--EWRSRMMLLENCLVEKWRDQLSKRSIQWEERLQEQRRTVQDKKKTAGRTSRSNP
SFRP5human      VMGR--KVDGQLLLMA---VYRW-DKKNKEMKFAVKFM----FSYPCSLYYPFFYGAAEP
                :*    :  .. ::       :* ::  :.       :

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Job Details

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[BEGIN JOB STATUS]

[BEGIN CLUSTALW TIME] Tue Aug 03 15:30:50 1999

[END CLUSTALW TIME] Tue Aug 03 15:30:53 1999

[VERSION] 5.0.0.296 

[SEARCH ID] CGI_3cews4d76fd.tl6

[EOL] CRLF

[COMMENT] /Comment=Protein Multiple Alignment

[COMMENT] /CGI_Ver=5.1.0.21

[ALGORITHM] CW

[QUERY FORMAT] FASTA/PEARSON

[QUERY TYPE] AA

[QUERY SEARCH] 1

[QUERY PATH] d:\decypher\query

[QUERY SET] CGI_3cews4d76fd.seq

[TARGET TYPE] AA

[RESULT PATH] d:\decypher\output

[OUTPUT FORMAT] TEXT PERCENTAGE

[CLUSTALW RESULTS]

 CLUSTAL W (1.7) Multiple Sequence Alignments

Sequence type explicitly set to Protein

Sequence format is Pearson

Sequence 1: SFRP1mouse      314 aa

Sequence 2: SFRP2mouse      295 aa

Sequence 3: SFRP3mouse      323 aa

Sequence 4: SFRP4human      346 aa

Sequence 5: SFRP5human      317 aa

Start of Pairwise alignments

Aligning...

Sequences (1:2) Aligned. Score:  35

Sequences (1:3) Aligned. Score:  19

Sequences (1:4) Aligned. Score:  16

Sequences (1:5) Aligned. Score:  52

Sequences (2:3) Aligned. Score:  17

Sequences (2:4) Aligned. Score:  16

Sequences (2:5) Aligned. Score:  37

Sequences (3:4) Aligned. Score:  47

Sequences (3:5) Aligned. Score:  18

Sequences (4:5) Aligned. Score:  14

Guide tree        file created:   [d:\decypher\query\CGI_3cews4d76fd.dnd]

Start of Multiple Alignment

There are 4 groups

Aligning...

Group 1: Sequences:   2      Score:2647

Group 2:                     Delayed

Group 3: Sequences:   2      Score:2572

Group 4: Sequences:   4      Score:2301

Sequence:2     Score:1972

Alignment Score 5046

CLUSTAL-Alignment file created  [d:\decypher\output\cgi_3cews4d76fd.out.aln]

[JOB MESSAGES]

Message=CGI_3cews4d76fd.tl6 had no errors.

[END JOB STATUS]

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brutlag@stanford.edu